Roslin Bioinformatics - ArkMAP Licence Information

     
 

Version 2.78 ©2006-15 The Roslin Institute.

The ArkMAP software is developed and owned by the Bioinformatics Group of The Roslin Institute, The Royal (Dick) School of Veterinary Studies, The University of Edinburgh, Edinburgh, Scotland UK EH25 9RG as part of the ArkDB Project.

This application is free to use for academic and not-for-profit users only. The application and code libraries are available under the GNU General Public Licence (GPLv3) for use in free but not proprietary programs. This software is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License for more details.

Licensing details for dependent third-party libraries are listed below. The licence documents are included in the licences directory of the JAR archive.

Please acknowledge use of this software.

Contact:roslin.bioinformatics@roslin.ed.ac.uk

 

Common Licences

 
 

Details of 89 third-party dependencies.

 
     
  ant (ant:ant:1.5)
 Licence: The Apache Software License, Version 1.1
 
  cglib (cglib:cglib-nodep:2.1_3)
 URL: http://cglib.sourceforge.net/
 Licence: The Apache Software License, Version 2.0
 
  ibatis2-common (com.ibatis:ibatis2-common:2.1.6.589)
 Licence: The Apache Software License, Version 2.0
 
  ibatis2-sqlmap (com.ibatis:ibatis2-sqlmap:2.1.6.589)
 Licence: The Apache Software License, Version 2.0
 
  jaxb-impl (com.sun.xml.bind:jaxb-impl:2.0.2)
 Licence: Common Development and Distribution License (CDDL) v1.0
 
  jaxb-xjc (com.sun.xml.bind:jaxb-xjc:2.0.2)
 Licence: Common Development and Distribution License (CDDL) v1.0
 
  commons-attributes-api (commons-attributes:commons-attributes-api:2.1)
 Licence: The Apache Software License, Version 2.0
 
  commons-beanutils (commons-beanutils:commons-beanutils:1.7.0)
 Licence: The Apache Software License, Version 2.0
 
  Codec (commons-codec:commons-codec:1.3)
 URL: http://jakarta.apache.org/commons/codec/
 Licence: The Apache Software License, Version 2.0
 
  HttpClient (commons-httpclient:commons-httpclient:3.0)
 URL: http://jakarta.apache.org/commons/httpclient/
 Licence: The Apache Software License, Version 2.0
 
  IO (commons-io:commons-io:1.1)
 URL: http://jakarta.apache.org/commons/io/
 Licence: The Apache Software License, Version 2.0
 
  Logging (commons-logging:commons-logging:1.0.4)
 URL: http://jakarta.apache.org/commons/logging/
 Licence: The Apache Software License, Version 2.0
 
  JavaBeans Activation Framework (JAF) (javax.activation:activation:1.1)
 URL: http://java.sun.com/products/javabeans/jaf/index.jsp
 Licence: Common Development and Distribution License (CDDL) v1.0
 
  JavaMail API (javax.mail:mail:1.4)
 URL: https://glassfish.dev.java.net/javaee5/mail/
 Licence: Common Development and Distribution License (CDDL) v1.0
 
  jaxb-api (javax.xml.bind:jaxb-api:2.0)
 Licence: Common Development and Distribution License (CDDL) v1.0
 
  jsr173_api (javax.xml.bind:jsr173_api:1.0)
 Licence: Common Development and Distribution License (CDDL) v1.0
 
  jaxen (jaxen:jaxen:1.1-beta-9)
 URL: http://jaxen.codehaus.org/
 Licence: JAXEN_LICENCE.txt
 
  jdom (jdom:jdom:1.0)
 Licence: JDOM_LICENCE.txt
 
  Forms (jgoodies:forms:1.0.5)
 URL: http://www.jgoodies.com/freeware/libraries/forms/
 Licence: BSD Open Source License
 
  looks (jgoodies:looks:1.2.0)
 URL: http://www.jgoodies.com/freeware/libraries/looks/
 Licence: BSD Open Source License
 
  Apache Log4j (log4j:log4j:1.2.16)
 URL: http://logging.apache.org/log4j/1.2/
 Licence: The Apache Software License, Version 2.0
 
  MySQL java connector (mysql:mysql-connector-java:5.1.6)
 URL: http://dev.mysql.com/usingmysql/java/
 Licence: The GNU General Public License, Version 2
 
  stax-utils (net.java.dev.stax-utils:stax-utils:20040917)
 Licence: BSD Open Source License
 
  Avalon Framework API (org.apache.avalon.framework:avalon-framework-api:4.3.1)
 URL: http://www.apache.org/excalibur/avalon-framework/avalon-framework-api/
 Licence: The Apache Software License, Version 2.0
 
  Avalon Framework Implementation (org.apache.avalon.framework:avalon-framework-impl:4.3.1)
 URL: http://www.apache.org/excalibur/avalon-framework/avalon-framework-impl/
 Licence: The Apache Software License, Version 2.0
 
  XmlSchema (org.apache.ws.commons:XmlSchema:SNAPSHOT)
 URL: http://ws.apache.org/commons/XmlSchema
 Licence: The Apache Software License, Version 2.0
 
  XBean :: Spring (org.apache.xbean:xbean-spring:2.8)
 URL: http://geronimo.apache.org/xbean/xbean-spring
 Licence: The Apache Software License, Version 2.0
 
  Batik animation engine (org.apache.xmlgraphics:batik-anim:1.7)
 URL: http://xmlgraphics.apache.org/batik/
 Licence: The Apache Software License, Version 2.0
 
  Batik AWT utilities (org.apache.xmlgraphics:batik-awt-util:1.7)
 URL: http://xmlgraphics.apache.org/batik/
 Licence: The Apache Software License, Version 2.0
 
  Batik bridge classes (org.apache.xmlgraphics:batik-bridge:1.7)
 URL: http://xmlgraphics.apache.org/batik/
 Licence: The Apache Software License, Version 2.0
 
  Batik image codecs (org.apache.xmlgraphics:batik-codec:1.7)
 URL: http://xmlgraphics.apache.org/batik/
 Licence: The Apache Software License, Version 2.0
 
  Batik CSS engine (org.apache.xmlgraphics:batik-css:1.7)
 URL: http://xmlgraphics.apache.org/batik/
 Licence: The Apache Software License, Version 2.0
 
  Batik DOM implementation (org.apache.xmlgraphics:batik-dom:1.7)
 URL: http://xmlgraphics.apache.org/batik/
 Licence: The Apache Software License, Version 2.0
 
  Batik external code (org.apache.xmlgraphics:batik-ext:1.7)
 URL: http://xmlgraphics.apache.org/batik/
 Licence: The Apache Software License, Version 2.0
 
  Batik extension classes (org.apache.xmlgraphics:batik-extension:1.7)
 URL: http://xmlgraphics.apache.org/batik/
 Licence: The Apache Software License, Version 2.0
 
  Batik GVT (Graphics Vector Tree) (org.apache.xmlgraphics:batik-gvt:1.7)
 URL: http://xmlgraphics.apache.org/batik/
 Licence: The Apache Software License, Version 2.0
 
  Batik patched Rhino (org.apache.xmlgraphics:batik-js:1.7)
 URL: http://xmlgraphics.apache.org/batik/
 Licence: Mozilla Public License version 1.1
 
  Batik SVG microsyntax parser library (org.apache.xmlgraphics:batik-parser:1.7)
 URL: http://xmlgraphics.apache.org/batik/
 Licence: The Apache Software License, Version 2.0
 
  Batik scripting language classes (org.apache.xmlgraphics:batik-script:1.7)
 URL: http://xmlgraphics.apache.org/batik/
 Licence: The Apache Software License, Version 2.0
 
  Batik SVG DOM implementation (org.apache.xmlgraphics:batik-svg-dom:1.7)
 URL: http://xmlgraphics.apache.org/batik/
 Licence: The Apache Software License, Version 2.0
 
  Batik Java2D SVG generator (org.apache.xmlgraphics:batik-svggen:1.7)
 URL: http://xmlgraphics.apache.org/batik/
 Licence: The Apache Software License, Version 2.0
 
  Batik SVG transcoder classes (org.apache.xmlgraphics:batik-transcoder:1.7)
 URL: http://xmlgraphics.apache.org/batik/
 Licence: The Apache Software License, Version 2.0
 
  Batik utility library (org.apache.xmlgraphics:batik-util:1.7)
 URL: http://xmlgraphics.apache.org/batik/
 Licence: The Apache Software License, Version 2.0
 
  Batik XML utility library (org.apache.xmlgraphics:batik-xml:1.7)
 URL: http://xmlgraphics.apache.org/batik/
 Licence: The Apache Software License, Version 2.0
 
  Apache FOP (org.apache.xmlgraphics:fop:0.94)
 URL: http://xmlgraphics.apache.org/fop/
 Licence: The Apache Software License, Version 2.0
 
  Apache XML Graphics Commons (org.apache.xmlgraphics:xmlgraphics-commons:1.2)
 URL: http://xmlgraphics.apache.org/commons/
 Licence: The Apache Software License, Version 2.0
 
  biojava3-core (org.biojava:biojava3-core:3.0.3)
 URL: http://www.biojava.org
 Licence: GNU LGPL v2
 
  Woodstox (org.codehaus.woodstox:wstx-asl:3.2.0)
 URL: http://woodstox.codehaus.org
 Licence: The Apache Software License, Version 2.0
 
  XFire Aegis Binding (org.codehaus.xfire:xfire-aegis:1.2.6)
 Licence: XFIRE_LICENCE.txt
 
  XFire Annotations (org.codehaus.xfire:xfire-annotations:1.2.6)
 Licence: XFIRE_LICENCE.txt
 
  XFire Core (org.codehaus.xfire:xfire-core:1.2.6)
 Licence: XFIRE_LICENCE.txt
 
  XFire Java 5 Module (org.codehaus.xfire:xfire-java5:1.2.6)
 Licence: XFIRE_LICENCE.txt
 
  XFire Spring Support (org.codehaus.xfire:xfire-spring:1.2.6)
 Licence: XFIRE_LICENCE.txt
 
  XFire XMLBeans Support (org.codehaus.xfire:xfire-xmlbeans:1.2.6)
 Licence: XFIRE_LICENCE.txt
 
  mybatis (org.mybatis:mybatis:3.0.2)
 URL: http://www.mybatis.org/
 Licence: The Apache Software License, Version 2.0
 
  SLF4J API Module (org.slf4j:slf4j-api:1.7.5)
 URL: http://www.slf4j.org
 Licence: MIT License
 
  SLF4J NOP Binding (org.slf4j:slf4j-nop:1.6.1)
 URL: http://www.slf4j.org
 Licence: MIT License
 
  Spring full (org.springframework:spring:1.2.6)
 Licence: The Apache Software License, Version 2.0
 
  ArkDB ArkMap Resources (org.thearkdb:arkdb-arkmap-resources:2.0)
 URL: http://www.thearkdb.org/code/arkdb-arkmap-resources
 Licence: GNU GENERAL PUBLIC LICENSE (GPLv3)
 
  ArkDB Data Access Interface (org.thearkdb:arkdb-dataaccess-interface:2.2)
 URL: http://www.thearkdb.org/code/arkdb-dataaccess-interface
 Licence: GNU GENERAL PUBLIC LICENSE (GPLv3)
 
  ArkDB DatasourceAware Model Implementation (org.thearkdb:arkdb-datasourceawaremodel:2.2)
 URL: http://www.thearkdb.org/code/arkdb-datasourceawaremodel
 Licence: GNU GENERAL PUBLIC LICENSE (GPLv3)
 
  ArkDB DB Data Access (org.thearkdb:arkdb-dbaccess:2.2)
 URL: http://www.thearkdb.org/code/arkdb-dbaccess
 Licence: GNU GENERAL PUBLIC LICENSE (GPLv3)
 
  ArkDB Database Property Files (org.thearkdb:arkdb-dbproperties:1.3)
 URL: http://www.thearkdb.org/code/arkdb-dbproperties
 Licence: GNU GENERAL PUBLIC LICENSE (GPLv3)
 
  ArkDB Script Files (org.thearkdb:arkdb-scripts:1.3)
 URL: http://www.thearkdb.org/code/arkdb-scripts
 Licence: GNU GENERAL PUBLIC LICENSE (GPLv3)
 
  ArkDB Search Utility (org.thearkdb:arkdb-search-utility:2.11)
 URL: http://www.thearkdb.org/code/arkdb-search-utility
 Licence: GNU GENERAL PUBLIC LICENSE (GPLv3)
 
  ArkDB Site Templates (org.thearkdb:arkdb-site-templates:1.01)
 URL: http://www.thearkdb.org/code/arkdb-site-templates
 Licence: GNU GENERAL PUBLIC LICENSE (GPLv3)
 
  ArkDB View Objects (org.thearkdb:arkdb-view:2.2)
 URL: http://www.thearkdb.org/code/arkdb-view
 Licence: GNU GENERAL PUBLIC LICENSE (GPLv3)
 
  ArkDB WebServices Files (org.thearkdb:arkdb-webservices-files:1.4)
 URL: http://www.thearkdb.org/code/arkdb-webservices-files
 Licence: GNU GENERAL PUBLIC LICENSE (GPLv3)
 
  ArkDB WebServices (org.thearkdb:arkdb-webservices-interface:1.4)
 URL: http://www.thearkdb.org/code/arkdb-webservices-interface
 Licence: GNU GENERAL PUBLIC LICENSE (GPLv3)
 
  ArkDB XML Data Access (org.thearkdb:arkdb-xmlaccess:2.2)
 URL: http://www.thearkdb.org/code/arkdb-xmlaccess
 Licence: GNU GENERAL PUBLIC LICENSE (GPLv3)
 
  Genomic Mapping Data Schema (org.thearkdb:gmd-schema:1.01)
 URL: http://www.thearkdb.org/code/gmd-schema
 Licence: GNU GENERAL PUBLIC LICENSE (GPLv3)
 
  postgresql (postgresql:postgresql:7.4.1-jdbc3)
 Licence: POSTGRES_JDBC_LICENCE.txt
 
  qdox (qdox:qdox:1.5)
 Licence: IRONSMITH_LICENCE.txt
 
  StAX API (stax:stax-api:1.0.1)
 URL: http://stax.codehaus.org/
 Licence: The Apache Software License, Version 2.0
 
  Ensembl Datasource Configuration (uk.ac.roslin:ensembl-config:1.78)
 URL: http://sourceforge.net/projects/jensembl/
 Licence: GNU GENERAL PUBLIC LICENSE (GPLv3)
 
  Ensembl Data Access Module (uk.ac.roslin:ensembl-data-access:1.78)
 URL: http://sourceforge.net/projects/jensembl/
 Licence: GNU GENERAL PUBLIC LICENSE (GPLv3)
 
  Ensembl Data Access Interface (uk.ac.roslin:ensembl-data-access-interface:1.78)
 URL: http://sourceforge.net/projects/jensembl/
 Licence: GNU GENERAL PUBLIC LICENSE (GPLv3)
 
  Ensembl Data Mapper (uk.ac.roslin:ensembl-datamapper:1.78)
 URL: http://sourceforge.net/projects/jensembl/
 Licence: GNU GENERAL PUBLIC LICENSE (GPLv3)
 
  Ensembl Datasource Aware Module (uk.ac.roslin:ensembl-datasource-aware-model:1.78)
 URL: http://sourceforge.net/projects/jensembl/
 Licence: GNU GENERAL PUBLIC LICENSE (GPLv3)
 
  Ensembl Model (uk.ac.roslin:ensembl-model:1.78)
 URL: http://sourceforge.net/projects/jensembl/
 Licence: GNU GENERAL PUBLIC LICENSE (GPLv3)
 
  The Roslin Genetic Model (uk.ac.roslin:roslin-model:1.3)
 URL: http://www.thearkdb.org/code/roslin-model
 Licence: GNU GENERAL PUBLIC LICENSE (GPLv3)
 
  WSDL4J (wsdl4j:wsdl4j:1.6.1)
 URL: http://sf.net/projects/wsdl4j
 Licence: CPL
 
  xalan (xalan:xalan:2.6.0)
 Licence: The Apache Software License, Version 1.1; CUP_LICENCE.txt
 
  xercesImpl (xerces:xercesImpl:2.6.2)
 Licence: The Apache Software License, Version 2.0
 
  xmlParserAPIs (xerces:xmlParserAPIs:2.6.2)
 Licence: The Apache Software License, Version 2.0
 
  XFire JSR 181 API (xfire:xfire-jsr181-api:1.0-M1)
 URL: http://xfire.codehaus.org
 Licence: XFIRE_LICENCE.txt
 
  XML Commons External Components XML APIs (xml-apis:xml-apis:1.3.04)
 URL: http://xml.apache.org/commons/components/external/
 Licence: The Apache Software License, Version 2.0
 
  XML Commons External Components XML APIs Extensions (xml-apis:xml-apis-ext:1.3.04)
 URL: http://xml.apache.org/commons/components/external/
 Licence: The Apache Software License, Version 2.0
 
  XMLBeans main classes (xmlbeans:xbean:2.2.0)
 URL: http://xmlbeans.apache.org
 Licence: The Apache Software License, Version 2.0